The library

1481-receive-feedback_553c0e44 · Closing the learning loop in multi-agent systems where human feedback refines next-cycle decisions.

conducty-checkpoint · Enforcing independent evidence per task before multiplying work; prevents bad specs from cascading into later phases.

histolab · Cancer histopathology or tissue classification when patch-level features matter more than whole-slide; enables GPU-scale training on high-res scans.

ensembl-annotation · Genomics workflows where you need canonical gene structure, variant consequences, or cross-species orthologs; authoritative source (if on-date).

conducty-code-review · Pre-merge correctness gate enforcing 5-lens rigor; catches bugs, security issues, and missed simplifications before ship.

hugging-science · Rapid iteration on NLP/CV scientific tasks where pre-trained backbone beats training from scratch; HF Hub democratizes state-of-art.

conducty-context · Bootstrapping Conducty: seeds the vault with project knowledge so next /plan reads architecture upfront.

hypogenic · Drug discovery when rational design beats screening; structure-guided SAR (structure-activity relationships) directly from sequences.

functional-screen-analysis · Functional genomics when you have CRISPR/RNAi data and need to rank candidates by statistical rigor; MAGeCK gold standard.

conducty-debug · Efficiently diagnosing where a prompt failed (plan/prompt/code level) rather than blindly retrying

geo-connector · Finding complementary expression datasets in GEO that validate or extend ENCODE regulatory findings

imaging-data-commons · Accessing large-scale radiology and pathology datasets for AI training without authentication

gnomad-variants · Filtering ENCODE regulatory variants by population rarity and assessing gene constraint before functional validation

skills-and-code-style-contribution · Formalizing code style conventions in a team repository through structured proposal workflows

conducty-execute · Orchestrating agentic work with tracer-first risk detection and calibrated review rigor matching task complexity

gtex-expression · Validating that genes near ENCODE regulatory elements are actually expressed in the matching tissue

conducty-improve · Closing the feedback loop so each plan produces measurable improvements to the next plan

gwas-catalog · Finding GWAS variants that overlap ENCODE regulatory elements to identify disease-associated regulatory effects

conducty-obsidian · Centralizing Conducty plan state, lessons, and design decisions where they persist across sessions

labarchive-integration · Automating electronic lab notebook entry from instrument outputs to create audit trails

conducty-plan · Translating shaped work into a time-budgeted, risk-aware execution plan with clear milestones

lamindb · Building a lineage-tracked, versioned registry of biological datasets for reproducible analysis

conducty-review · Systematically extracting what worked, what failed, and why—before moving to the improvement phase

2224-editor-optimization_5342a688 · Teams debugging slow editor performance on weak hardware or large codebases.

conducty-shape · Medium/high-complexity goals where requirements are unclear and scope needs bounding before implementation.

jaspar-motifs · Confirming ChIP-seq specificity or discovering co-binding regulatory complexes when gold-standard target validation is required.

random-number · Quick random sampling in simple workflows when no statistical properties or reproducibility are needed.

conducty-ship · Pre-merge gates that must mechanically verify lint, tests, and secrets before human approval.

liteparse · Local parsing with spatial awareness when cloud APIs are forbidden or bounding boxes are required for RAG grounding.

liftover-coordinates · Integrating historical GWAS or legacy ENCODE data when assembly consistency is a silent correctness requirement.

05-ai-observability-and-reversibility · Pre-deployment review of AI-assisted features when customer trust and reversibility are non-negotiable.

conducty-system · Multi-plan projects where system-level learning (what worked, what failed, what changes) is valued over ad-hoc execution.

conducty-tdd · Feature development where verification is continuous and acceptance criteria are unambiguous before coding starts.

markdown-mermaid-writing · Technical narratives where inline diagrams clarify concepts without external tool switching.

conducty-terse · Prompt engineering where every token spent must directly advance the acceptance criteria.

conducty-vault-graph · Maintenance sweeps when vault noise accumulates and signal-to-noise ratio drops.

markitdown · Bulk document ingestion for RAG when format diversity requires unified conversion.

peak-annotation · Functional interpretation of ChIP-seq experiments when gene-centric answers are needed quickly.

conducty-verify · Marking work complete only after running verification commands and reading output.

matchms · Identifying unknown compounds from mass spectra using spectral similarity.

conducty-worktrees · Parallel prompt execution targeting the same repo without merge conflicts.

matlab · Matrix operations and scientific computing with full visualization control.

configuring-tauri-apps · Fine-tuning Tauri desktop app security, permissions, and platform behavior.

matplotlib · Creating publication-quality scientific plots with full customization control.

configuring-tauri-capabilities · Fine-tuning Tauri desktop app security, permissions, and platform behavior.

medchem · Designing drug molecules with integrated ADME and toxicity assessment.

eve-lab-topology-validation · Validating enzymatic reaction networks for synthetic biology feasibility.

configuring-tauri-csp · Fine-tuning Tauri desktop app security, permissions, and platform behavior.

configuring-tauri-http-headers · Fine-tuning Tauri desktop app security, permissions, and platform behavior.

nx-plugins · Extending NestJS monorepo with custom plugins and integrations.