cyberneticlibrary

The library

Everything we index — ranked by what works, never by stars.

WORKS 48
Parse and fingerprint moleculesskillDataL2
datamol · Drug discovery pipelines avoiding low-level RDKit chemistry code.
WORKS 48
Build with the Claude APIskillEngineeringL2
claude-api · Quick lookups of Claude model IDs, pricing, and capability differences.
WORKS 48
Create engineering drawingsskillProductL2
b123d-drawing · Generating publication-quality 2D chemical structure images from SMILES.
WORKS 48
Convert BAM files to visualizationsskillDataL2
deeptools · Efficient RNA-seq QC and coverage visualization across large datasets.
WORKS 48
Add Clerk authentication to Next.jsskillEngineeringL2
clerk-auth · Zero-code user auth integration for apps (replaces custom JWT/sessions).
WORKS 48
Query cancer dependency databasesskillDataL2
depmap · One-query CRISPR dependency lookups for target prioritization.
WORKS 48
Profile how someone thinksskillProductivityL1
dhdna-profiler · Fast DNA feature extraction for ML model input (classification, regression).
WORKS 48
Control FL Studio from ClaudeskillProductL2
flstudio-production · Music production workflows integrating algorithmic composition with DAW.
WORKS 48
Use Cloudflare Workers effectivelyskillEngineeringL2
cloudflare-core · Deciding between KV, R2, D1, or Durable Objects for a specific access pattern.
WORKS 48
Learn DaVinci Resolve video editingskillEngineeringL1
docs · Automating complex post-production workflows (color, editing, effects) when manual Resolve UI interaction is too slow or repetitive.
WORKS 48
Send transactional emails via CloudflareskillOpsL2
cloudflare-email-service · Building transactional email flows in Cloudflare Workers when you need zero-config email without external SMTP providers.
WORKS 48
Create formatted Word documentsskillOpsProductivityL1
docx · Programmatically generating professional Word documents with complex formatting (TOC, headings, styled lists, page breaks) when manual editing is infeasible.
WORKS 48
Map codebase architecture and dependenciesskillEngineeringL2
architecture-knowledge-graph · Creating an auditable, queryable service map across multiple repos when you need to track deployment units and their communication patterns.
WORKS 48
Route Cloudflare tasks to specialistsskillEngineeringL2
cloudflare-orchestrator · Unblocking a Cloudflare user who knows what they want to build but not which skill/service to use.
WORKS 48
Run protein folding and embeddings modelsskillEngineeringL2
esm · Computing per-residue embeddings for downstream ML tasks (docking, binding prediction, active-site detection) when you need a pretrained protein encoder.
WORKS 48
Design clean architecture diagramsskillEngineeringProductL1
excalidraw-diagram-design · Creating hand-drawn style system diagrams when you want visual clarity without the stiffness of Visio or PlantUML.
WORKS 48
Deploy Cloudflare Workers and PagesskillEngineeringL2
cloudflare · Quick reference for common Cloudflare questions when you don't need specialized skill depth.
WORKS 48
Analyze phylogenetic tree dataskillEngineeringL2
etetoolkit · Comparative genomics and phylogenetic analysis when you need programmatic tree manipulation and statistical summaries.
WORKS 48
Generate workflow and process diagramsskillOpsProductL2
flowzap-diagrams · Quickly iterating on process flowcharts and decision trees when you need automatic layout and export.
WORKS 48
Create interactive code walkthroughsskillEngineeringProductivityL1
code-tour · Onboarding developers or documenting complex code patterns when linear documentation is insufficient.
WORKS 48
Search technical and scientific contentskillDataSalesL2
exa-search · Finding technical references, research papers, and blog posts when keyword search is too literal.
WORKS 48
Reference valid CLI commandsskillL1
2293-commands_b3537439 · Legacy command execution when no more specific skill is available.
WORKS 54
Onboard to new codebases quicklyskillEngineeringL2
codebase-onboarding · Bootstrapping documentation for an unfamiliar codebase when you need structure before reading individual files.
WORKS 48
Analyze scientific data filesskillDataL2
exploratory-data-analysis · Quickly understanding data distribution, correlations, and anomalies before modeling when you need visual and statistical summaries.
WORKS 48
Parse flow cytometry data filesskillDataL1
flowio · Flow cytometry experiments requiring FCS file parsing and event data extraction.
WORKS 48
Build chromatin accessibility mapsskillDataL2
accessibility-aggregation · Building comprehensive open chromatin maps from multiple ATAC-seq and DNase-seq experiments.
WORKS 48
Run computational fluid dynamics simulationsskillEngineeringL2
fluidsim · High-performance computational fluid dynamics simulations with pseudospectral methods.
WORKS 48
Batch process genome experimentsskillDataL2
batch-analysis · Quality screening and comparison across 5+ ENCODE experiments simultaneously.
WORKS 48
Generate images with AI modelsskillMarketingProductivityL2
generate-image · Creating visual assets and artwork when technical diagrams are not needed.
WORKS 48
Train genomic region embeddingsskillDataL2
geniml · Unsupervised learning on genomic interval data, region embeddings, and single-cell ATAC analysis.
WORKS 48
Validate single-cell gene expressionskillDataL2
cellxgene-context · Resolving cell-type contributions to bulk ENCODE regulatory signals using single-cell expression.
WORKS 48
Fetch department information from FeishuskillOpsL2
organization-batch-get-departments-skill · Fetching department metadata in bulk from Feishu (Lark) directory systems.
WORKS 52
Analyze competitor positioning and messagingskillSalesMarketingL1
competitor-teardown · Structured competitive analysis comparing positioning, messaging, and channel behavior.
WORKS 48
Generate ENCODE research citationsskillEngineeringL1
cite-encode · Formatting citations for ENCODE datasets and publications consistently.
WORKS 48
Build multiplatform Kotlin Compose UIskillEngineeringL2
compose-multiplatform-patterns · Building reusable UI component patterns for web and mobile platforms simultaneously.
WORKS 48
Analyze geographic and spatial dataskillDataL2
geopandas · Vector geospatial data operations (shapefiles, GeoJSON) with spatial joins and analysis.
WORKS 48
Annotate genetic variants with clinical dataskillEngineeringL2
clinvar-annotation · Annotating genomic variants with ClinVar pathogenicity and frequency data.
WORKS 48
Refactor React components for flexibilityskillEngineeringL1
composition-patterns · Documenting and testing reusable component composition architectures.
WORKS 48
Detect and report available compute resourcesskillEngineeringL1
get-available-resources · Discovering available cloud resources and capabilities programmatically.
WORKS 48
Compare regulatory patterns across tissuesskillDataL2
compare-biosamples · Comparing metadata and attributes across ENCODE biosamples.
WORKS 48
Query bioinformatics databases rapidlyskillDataL2
gget · Querying genomic databases and retrieving sequence and annotation data.
WORKS 48
Cross-reference genomics with scientific literatureskillDataL2
cross-reference · Linking data across multiple heterogeneous sources with consistent identifiers.
WORKS 48
Reference conductor orchestration contractsskillEngineeringL2
conductor-core · Closing feedback loops across spec→resolve→orchestrate→enforce→review→ship in multi-organ systems where each phase owns a distinct gate.
WORKS 48
Submit protocols to autonomous lab executionskillOpsL2
ginkgo-cloud-lab · Validating protein expression or generating rapid fluorescent bioart when local infrastructure unavailable; 5–11 day turnaround beats lab overhead.
WORKS 56
Track data provenance for publicationskillDataL2
data-provenance · Publishing genomics workflows where 'we aligned with STAR' is too vague—lock down exact versions, genomes, parameters, and accessions for publication-ready methods.
WORKS 55
Design premium websites with minimal eleganceskillProductL2
luxury-frontend-design · Client-facing high-end e-commerce, SaaS landing pages, or luxury event sites where visual polish directly impacts conversion and brand perception.
WORKS 48
Engineer protein glycosylation patternsskillEngineeringL2
glycoengineering · Antibody Fc optimization (enhanced ADCC/CDC), therapeutic half-life engineering, or vaccine design where glycan patterns directly control immune recognition.
WORKS 48
Research disease mechanisms with genomicsskillDataL2
disease-research · Disease mechanism research where non-coding variants need interpretation, or identifying therapeutic targets from epigenomic evidence rather than coding-only databases.
WORKS 48
Initialize Conducty for first-run setupskillEngineeringL2
conducty-bootstrap · First-time Conducty users who need muscle-memory of the full cycle (Plan→Execute→Verify→Improve) before running real multi-agent work.
WORKS 48
Download ENCODE genomics filesskillDataL2
download-encode · Bulk download and organization of ENCODE files when local infrastructure needed; starts with dry_run preview to confirm scope before committing.
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