Convert BAM files to visualizations
deeptoolsskillsetup L2★27,559
K-Dense-AI/scientific-agent-skills ↗What it does
Process RNA-seq and genomic bigWig data at scale
Best for
Efficient RNA-seq QC and coverage visualization across large datasets.
Inputs
- · BAM/bigWig files
- · region coordinates
- · sample groups
Outputs
- · Normalized coverage tracks
- · depth statistics
- · region aggregations
Requires
- · deeptools suite
- · samtools
- · pysam
Preconditions
Indexed BAM/bigWig files, reference genome coordinates
Failure modes
Unindexed input files, region outside genome bounds, memory limit
Trust signals
- · deeptools upstream
- · Optimized for large genomics files