The library

etetoolkit · Comparative genomics and phylogenetic analysis when you need programmatic tree manipulation and statistical summaries.

flowzap-diagrams · Quickly iterating on process flowcharts and decision trees when you need automatic layout and export.

code-tour · Onboarding developers or documenting complex code patterns when linear documentation is insufficient.

exa-search · Finding technical references, research papers, and blog posts when keyword search is too literal.

2293-commands_b3537439 · Legacy command execution when no more specific skill is available.

codebase-onboarding · Bootstrapping documentation for an unfamiliar codebase when you need structure before reading individual files.

exploratory-data-analysis · Quickly understanding data distribution, correlations, and anomalies before modeling when you need visual and statistical summaries.

coding-agent · Rapidly bootstrapping code or refactoring when you have a clear spec and want to avoid manual boilerplate.

flowio · Flow cytometry experiments requiring FCS file parsing and event data extraction.

accessibility-aggregation · Building comprehensive open chromatin maps from multiple ATAC-seq and DNase-seq experiments.

fluidsim · High-performance computational fluid dynamics simulations with pseudospectral methods.

batch-analysis · Quality screening and comparison across 5+ ENCODE experiments simultaneously.

generate-image · Creating visual assets and artwork when technical diagrams are not needed.

geniml · Unsupervised learning on genomic interval data, region embeddings, and single-cell ATAC analysis.

cellxgene-context · Resolving cell-type contributions to bulk ENCODE regulatory signals using single-cell expression.

organization-batch-get-departments-skill · Fetching department metadata in bulk from Feishu (Lark) directory systems.

competitor-teardown · Structured competitive analysis comparing positioning, messaging, and channel behavior.

geomaster · Geospatial workflows spanning satellite imagery, GIS operations, and spatial ML across 70+ topics.

cite-encode · Formatting citations for ENCODE datasets and publications consistently.

compose-multiplatform-patterns · Building reusable UI component patterns for web and mobile platforms simultaneously.

geopandas · Vector geospatial data operations (shapefiles, GeoJSON) with spatial joins and analysis.

clinvar-annotation · Annotating genomic variants with ClinVar pathogenicity and frequency data.

composition-patterns · Documenting and testing reusable component composition architectures.

get-available-resources · Discovering available cloud resources and capabilities programmatically.

compare-biosamples · Comparing metadata and attributes across ENCODE biosamples.

computer-use-agents · Deploying AI agents to automate computer interactions and workflows.

gget · Querying genomic databases and retrieving sequence and annotation data.

cross-reference · Linking data across multiple heterogeneous sources with consistent identifiers.

conductor-core · Closing feedback loops across spec→resolve→orchestrate→enforce→review→ship in multi-organ systems where each phase owns a distinct gate.

ginkgo-cloud-lab · Validating protein expression or generating rapid fluorescent bioart when local infrastructure unavailable; 5–11 day turnaround beats lab overhead.

data-provenance · Publishing genomics workflows where 'we aligned with STAR' is too vague—lock down exact versions, genomes, parameters, and accessions for publication-ready methods.

luxury-frontend-design · Client-facing high-end e-commerce, SaaS landing pages, or luxury event sites where visual polish directly impacts conversion and brand perception.

conductor-orchestrator · Multi-organ builds where each task needs the right capability loadout (not generic) and visual work needs brand taste injected before code generation.

glycoengineering · Antibody Fc optimization (enhanced ADCC/CDC), therapeutic half-life engineering, or vaccine design where glycan patterns directly control immune recognition.

disease-research · Disease mechanism research where non-coding variants need interpretation, or identifying therapeutic targets from epigenomic evidence rather than coding-only databases.

conducty-bootstrap · First-time Conducty users who need muscle-memory of the full cycle (Plan→Execute→Verify→Improve) before running real multi-agent work.

gtars · Genomic interval analysis where performance matters (millions of regions) or tokenization for genomic ML models; orders of magnitude faster than bedtools in pure Python.

download-encode · Bulk download and organization of ENCODE files when local infrastructure needed; starts with dry_run preview to confirm scope before committing.

1481-receive-feedback_553c0e44 · Closing the learning loop in multi-agent systems where human feedback refines next-cycle decisions.

conducty-checkpoint · Enforcing independent evidence per task before multiplying work; prevents bad specs from cascading into later phases.

histolab · Cancer histopathology or tissue classification when patch-level features matter more than whole-slide; enables GPU-scale training on high-res scans.

ensembl-annotation · Genomics workflows where you need canonical gene structure, variant consequences, or cross-species orthologs; authoritative source (if on-date).

conducty-code-review · Pre-merge correctness gate enforcing 5-lens rigor; catches bugs, security issues, and missed simplifications before ship.

hugging-science · Rapid iteration on NLP/CV scientific tasks where pre-trained backbone beats training from scratch; HF Hub democratizes state-of-art.

epigenome-profiling · Cancer or developmental biology where multi-mark epigenome profiles reveal tumor states or differentiation trajectories better than single assay.

conducty-context · Bootstrapping Conducty: seeds the vault with project knowledge so next /plan reads architecture upfront.

hypogenic · Drug discovery when rational design beats screening; structure-guided SAR (structure-activity relationships) directly from sequences.

functional-screen-analysis · Functional genomics when you have CRISPR/RNAi data and need to rank candidates by statistical rigor; MAGeCK gold standard.

conducty-debug · Efficiently diagnosing where a prompt failed (plan/prompt/code level) rather than blindly retrying

geo-connector · Finding complementary expression datasets in GEO that validate or extend ENCODE regulatory findings