The library

05-ai-observability-and-reversibility · Pre-deployment review of AI-assisted features when customer trust and reversibility are non-negotiable.

conducty-system · Multi-plan projects where system-level learning (what worked, what failed, what changes) is valued over ad-hoc execution.

methylation-aggregation · Understanding tissue-specific regulatory chromatin state when aggregated epigenetic methylation landscape is the bottleneck.

conducty-tdd · Feature development where verification is continuous and acceptance criteria are unambiguous before coding starts.

markdown-mermaid-writing · Technical narratives where inline diagrams clarify concepts without external tool switching.

motif-analysis · Discovering unknown binding factors or validating ChIP-seq specificity when a prior motif is not available.

conducty-terse · Prompt engineering where every token spent must directly advance the acceptance criteria.

market-research-reports · Go/no-go decisions where market sizing and competitive threat assessment are the binding constraints.

structured-attack-campaign · Red-team validation when system robustness against coordinated attack is a non-negotiable requirement.

conducty-vault-graph · Maintenance sweeps when vault noise accumulates and signal-to-noise ratio drops.

markitdown · Bulk document ingestion for RAG when format diversity requires unified conversion.

peak-annotation · Functional interpretation of ChIP-seq experiments when gene-centric answers are needed quickly.

conducty-verify · Marking work complete only after running verification commands and reading output.

matchms · Identifying unknown compounds from mass spectra using spectral similarity.

conducty-worktrees · Parallel prompt execution targeting the same repo without merge conflicts.

matlab · Matrix operations and scientific computing with full visualization control.

configuring-tauri-apps · Fine-tuning Tauri desktop app security, permissions, and platform behavior.

matplotlib · Creating publication-quality scientific plots with full customization control.

configuring-tauri-capabilities · Fine-tuning Tauri desktop app security, permissions, and platform behavior.

medchem · Designing drug molecules with integrated ADME and toxicity assessment.

eve-lab-topology-validation · Validating enzymatic reaction networks for synthetic biology feasibility.

configuring-tauri-csp · Fine-tuning Tauri desktop app security, permissions, and platform behavior.

modal · Running Python functions serverless with GPU/TPU for batch compute.

pipeline-guide · Selecting and executing appropriate pipeline for your genomics workflow.

configuring-tauri-http-headers · Fine-tuning Tauri desktop app security, permissions, and platform behavior.

molecular-dynamics · Running classical MD simulations with analysis pipelines and GPU acceleration.

nx-plugins · Extending NestJS monorepo with custom plugins and integrations.

configuring-tauri-permissions · Fine-tuning Tauri desktop app security, permissions, and platform behavior.

molfeat · Quickly featurizing chemical structures for QSAR, virtual screening, or deep learning without manual descriptor engineering.

flags · Quickly debugging why a feature behaves differently across canary/next/experimental channels.

configuring-tauri-scopes · Restricting desktop app file access to safe directories without implementing custom auth per command.

networkx · Analyzing organizational hierarchies, social networks, or biological interaction networks without custom graph code.

spk-admin-dashboard · Quickly finding the dashboard URL without manually hunting for localhost ports or PIDs.

connect-apps · Automating one-off integrations with external services (Gmail, Slack, GitHub) without building custom auth.

neurokit2 · Rapidly extracting heart rate, HRV, brainwave power, or autonomic indices from raw biosignals without implementing DSP.

publication-trust · Deciding whether to build downstream analysis on a paper's methods before wasting resources on unreliable findings.

connect · Orchestrating multi-app workflows (send alert → create issue → post to Slack) without hardcoding integrations.

quality-assessment · Quickly deciding if a sequencing sample meets publication standards without manual QC checklist.

stage · Bundling code changes without manually juggling staging, commits, and conflict resolution.

connections-optimizer · Reducing inter-service latency without manual network tuning or load-balancer rule writing.

regulatory-elements · Linking noncoding variants or peaks to biological function without training custom classification models.

content-engine · Quickly repurposing one article into tweets, LinkedIn posts, and emails without rewriting each variant.

omero-integration · Centralizing large imaging datasets with rich metadata without custom database schema design.

scientific-writing · Rapidly drafting a paper outline before filling in analyses, rather than starting from a blank page.

twmd · Previewing tweet formatting before posting without trial-and-error on the platform.

open-notebook · Research teams needing self-hosted document analysis with data privacy and multi-speaker podcast generation.

speckit-tasks · Spec Kit workflow Phase 4 (tasks generation) when translating designs into implementation dependencies.

opentrons-integration · Production liquid-handling workflows requiring full Protocol API v2 access and hardware-specific module control.

search-encode · Discovering existing ENCODE experiments before downloading when exploring what data is available for a tissue/assay.

refactor · Large refactoring efforts where test coverage provides a safety net to avoid breaking changes.