cyberneticlibrary

Write Opentrons liquid handler protocols

opentrons-integrationskillsetup L227,559
K-Dense-AI/scientific-agent-skills
What it does

Write and execute OT-2/Flex liquid-handling automation protocols

Best for

Production liquid-handling workflows requiring full Protocol API v2 access and hardware-specific module control.

Inputs
  • · Python protocol definition with metadata
  • · Labware and module definitions (deck slots)
Outputs
  • · Executable Protocol API v2 commands
  • · Simulated protocol execution logs
Requires
  • · Opentrons Protocol API v2
  • · Python runtime
  • · OT-2 or Flex robot hardware (or simulator)
Preconditions

Python 3.7+, Opentrons app/simulator installed, valid labware API names

Failure modes

Invalid deck slot assignment, labware resource conflict, insufficient tip volume, incorrect module state

Trust signals
  • · Official Opentrons Protocol API
  • · Support for hardware modules (heater-shaker, thermocycler, magnetic)
  • · Multi-channel pipette optimization