Analyze protein sequences and structure
full_protein_analysisskillsetup L3★147
InternScience/scp ↗What it does
Analyze protein structures, interactions, and functional domains from sequences or PDB files
Best for
Rapidly characterizes unknown proteins by identifying homologs, domains, and predicted 3D structure.
Inputs
- · [object Object]
- · [object Object]
- · [object Object]
Outputs
- · [object Object]
- · [object Object]
- · [object Object]
Requires
- · BLAST
- · InterProScan
- · Pymol
- · DSSP
- · FoldSeek
Preconditions
FASTA or PDB file, reference database access
Failure modes
Sequence too short for reliable homology; PDB missing cofactors affects structure interpretation
Trust signals
- · BLAST E-value statistics
- · Pfam domain confidence scores
- · Structure validation (Ramachandran)