Store and query genomic variant data
tiledbvcfskillsetup L3★27,559
K-Dense-AI/scientific-agent-skills ↗What it does
Store and query genomic VCF data in TileDB arrays
Best for
Storing and querying large-scale genomic cohorts efficiently.
Inputs
- · VCF files
- · sample metadata
- · genomic regions
Outputs
- · TileDB array
- · query results
- · variant statistics
Requires
- · TileDB
- · TileDB-VCF
- · bcftools
Preconditions
VCF files in standard format; TileDB installed; indexing complete
Failure modes
Memory overflow on large samples; incomplete VCF headers; array lock contention
Trust signals
- · TileDB standard
- · VCF parsing
- · array optimization