Build phylogenetic trees and visualizations
phylogeneticsskillsetup L3★27,559
K-Dense-AI/scientific-agent-skills ↗What it does
Infer evolutionary trees from sequence alignments and fossil data
Best for
Comparative genomics and evolutionary hypothesis testing
Inputs
- · aligned sequences (FASTA/Phylip)
- · divergence times
- · fossil calibrations
Outputs
- · phylogenetic tree (Newick)
- · branch support values
- · divergence time estimates
Requires
- · PAML
- · RAxML
- · MrBayes
- · BEAST
Preconditions
Sequences aligned; molecular clock model chosen
Failure modes
Poor sequence quality; insufficient taxa; clock model misspecified