Execute genomics workflows on DNAnexus
dnanexus-integrationskillsetup L3★27,559
K-Dense-AI/scientific-agent-skills ↗What it does
Build and run genomics apps/applets on DNAnexus cloud platform
Best for
Deploying bioinformatics pipelines (alignment, variant calling, quality control) to a managed cloud platform with built-in data governance.
Inputs
- · app skeleton (dxapp.json)
- · Python/Bash entry point code
- · FASTQ/BAM/VCF input files
Outputs
- · deployed app/applet
- · job results (aligned reads, variants, etc.)
- · analysis reports
Requires
- · DNAnexus account
- · dxpy Python SDK
- · dx CLI
- · optional Docker for complex environments
Preconditions
DNAnexus account active; dxpy/dx installed; project created on platform
Failure modes
Complex dependency installation requires Docker image; large file transfers slow; job monitoring needs polling; platform-specific job scheduling
Trust signals
- · Structured app development with dxapp.json
- · Batch job orchestration
- · Data object lifecycle management
- · Five reference modules with patterns