Run metabolic modeling simulations
cobrapyskillsetup L3★27,559
K-Dense-AI/scientific-agent-skills ↗What it does
Perform flux balance analysis and metabolic modeling
Best for
Systems biology workflows requiring genome-scale metabolic model analysis.
Inputs
- · SBML metabolic models
- · FBA/FVA parameters
- · gene knockout lists
Outputs
- · Flux distributions
- · Variability ranges
- · Knockout predictions
Requires
- · COBRApy 0.31.1+
- · GLPK/CPLEX solver
- · optlang
Preconditions
Python 3.9+, cobra library installed, solver available
Failure modes
Infeasible model (no solution), solver memory exceeded, invalid SBML
Trust signals
- · OpenCOBRA upstream
- · Bundled models (iJO1366, e_coli_core)
- · SBML/JSON/YAML I/O