cyberneticlibrary

Query 40+ bioinformatics databases unified

bioservicesskillsetup L227,559
K-Dense-AI/scientific-agent-skills
What it does

Manage async background job queues

Best for

When integrating data from multiple bioinformatics databases (UniProt, KEGG, ChEMBL) in a single workflow with consistent ID mapping.

Inputs
  • · Gene/protein/compound identifiers
  • · Database query terms
Outputs
  • · Cross-database protein annotations
  • · Pathway mappings
  • · ID conversions
Requires
  • · NCBI Entrez
  • · KEGG
  • · UniProt
  • · BLAST
Preconditions
  • · Python 3.9-3.12
  • · bioservices 1.16.0+ installed
  • · Internet access to 40+ bioinformatics APIs
Trust signals
  • · Wraps 40+ curated bioinformatics web services