Organize and validate brain imaging datasets
bidsskillsetup L2★27,559
K-Dense-AI/scientific-agent-skills ↗What it does
Organize and validate neuroscience datasets
Best for
When organizing multi-modal neuroimaging/biomedical datasets for repositories (OpenNeuro, DANDI) or validating BIDS compliance.
Inputs
- · Raw imaging data (DICOM, FASTQ, etc.)
- · BIDS samplesheet
Outputs
- · BIDS-compliant directory structure
- · JSON sidecar metadata
Requires
- · PyBIDS
Preconditions
- · Raw neuroimaging data available
- · PyBIDS installed
- · DICOM converter tool (HeuDiConv/dcm2bids) for raw conversion
Failure modes
- · DICOM metadata missing required BIDS fields
- · Invalid entity order in filename fails validation
- · .bidsignore patterns over-exclude critical files
Trust signals
- · Aligned to BIDS Specification v1.11.x