Work with single-cell genomics data
anndataskillsetup L2★27,559
K-Dense-AI/scientific-agent-skills ↗What it does
Read, write, and concatenate annotated matrices
Best for
Single-cell genomics where scverse integration is mandatory
Inputs
- · h5ad/zarr/CSV files
- · observation/variable metadata
Outputs
- · AnnData objects
- · backed-mode lazy data
Requires
- · AnnData 0.12.16+
- · Python 3.11+
- · scanpy (10X)
Preconditions
Supported format; Python 3.11+; disk/memory for backed mode
Failure modes
Deprecated APIs (AnnData.concatenate); format incompatibility; OOM
Trust signals
- · Official scverse standard
- · lazy I/O for 100GB+